If you want to have the notes and pop-ups to be included in your print-outs you would need to make a change in the Preferences of Adobe Reader:
•Click on the Edit menu | Preferences | Commenting
•Check the box next to "Print notes and pop-ups"
Note that some notes and other annotations are configured to remain invisible when printing. These annotations will not print even with the "Print notes and pop-ups" checked. In order to print these annotations, you need to open the PDF file using Amyuni PDF Creator and change the "Visible when printing" flag from False to True.
![Image](http://amyuni.com/forum/images/screenshot.387.jpg)